منابع مشابه
Motif Enrichment Tool
The Motif Enrichment Tool (MET) provides an online interface that enables users to find major transcriptional regulators of their gene sets of interest. MET searches the appropriate regulatory region around each gene and identifies which transcription factor DNA-binding specificities (motifs) are statistically overrepresented. Motif enrichment analysis is currently available for many metazoan s...
متن کاملacc-Motif Detection Tool
Background: Network motif algorithms have been a topic of research mainly after the 2002-seminal paper from Milo et al, that provided motifs as a way to uncover the basic building blocks of most networks. In Bioinformatics, motifs have been mainly applied in the field of gene regulation networks field. Results: This paper proposes new algorithms to exactly count isomorphic pattern motifs of siz...
متن کاملThe SiteSeeker Motif Discovery Tool
In this paper we describe some utilizing conditions of a recently published tool that offers two basic functions for the classical problem of discovering motifs in a set of promoter sequences. For the first it is assumed that not necessarily all of the sequences possess a common motif of given length l. In this case, CHECKPROMOTER allows an exact identification of maximal subsets of related pro...
متن کاملThe NestedMICA motif inference tool
NestedMICA is a sensitive, scalable, pattern-discovery system, aimed at finding transcription factor binding sites and similar motifs in biological sequence. More discussion of the principles behind NestedMICA, and an evaluation of its sensitivity can be found in a recent paper [?]. If you have any problems or questions about the system, please contact Thomas Down.
متن کاملMotif Tool Manager: a web-based framework for motif discovery
MOTIVATION Motif Tool Manager is a web-based framework for comparing and combining different approaches to discover novel DNA motifs. It comes with a set of five well-known approaches to motif discovery. It provides an easy mechanism for adding new motif finding tools to the framework through a web-interface and a minimal setup of the tools on the server. Users can execute the tools through the...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2014
ISSN: 1362-4962,0305-1048
DOI: 10.1093/nar/gku456